The Samuel Roberts Noble Foundation, Inc.

Analytical Chemistry Core Facility: Publications

Qiu, F., Fine, D. D., Wherritt, D. J., Lei, Z. & Sumner, L. W. (2016). PlantMAT: A Metabolomics Tool for Predicting the Specialized Metabolic Potential of a System and for Large-scale Metabolite Identifications. Analytical Chemistry, (epub), doi: 10.1021/acs.analchem.6b00906.
Geng, S., Misra, B.B., de Armas, E., Huhman, D. V., Alborn, H.T., Sumner, L. W. & Chen, S. (2016). Jasmonate-mediated stomatal closure under elevated CO2 revealed by time-resolved metabolomics. Plant Journal, (epub ahead of print), DOI: 10.1111/tpj.13296.
Srivastava, A. C., Chen, F., Ray, T., Pattathil, S., Pena, M. J., Avci, U., Li, H., Huhman, D. V., Backe, J., Urbanowicz, B., Miller, J. S., Bedair, M., Wyman, C. E., Sumner, L. W., York, W. S., Hahn, M. G., Dixon, R. A., Blancaflor, E. B. & Tang, Y. (2015). Loss of function of folylpolyglutamate synthetase 1 reduces lignin content and improves cell wall digestibility in Arabidopsis. Biotechnology for Biofuels, 8 (224), doi: 10.1186/s13068-015-0403-z.
Watson, B. S., Bedair, M., Urbanczyk-Wochniak, E., Huhman, D. V., Yang, D - S., Allen, S. N., Li, W., Tang, Y. & Sumner, L. W. (2015). Integrated metabolomics and transcriptomics reveal enhanced specialized metabolism in Medicago truncatula root border cells. Plant Physiology, 167 (4), 1699-1716 doi: 10.1104/pp.114.253054.
Ishiga, T., Uppalapati, S. R., Gill, U. S., Huhman, D. V., Tang, Y. & Mysore, K. S. (2015). Transcriptomic and metabolomic analyses identify a role for chlorophyll catabolism and phytoalexin during Medicago nonhost resistance against Asian soybean rust. Scientific Reports, 5 (13061), doi: 10.1038/srep13061.
Young, C. A., Charlton, N. D., Takach, J. E., Swoboda, G. A., Trammell, M. A., Huhman, D. V. & Hopkins, A. A. (2014). Characterization of Epichloë coenophiala within the U.S.: are all tall fescue endophytes created equal? Frontiers in Chemistry, 2 (95), doi: 10.3389/fchem.2014.00095.
Zhang, J., Cruz de Carvalho, M. H., Torres-Jerez, I., Kang, Y., Allen, S. N., Huhman, D. V., Tang, Y., Murray, J., Sumner, L. W. & Udvardi, M. K. (2014). Global reprogramming of transcription and metabolism in Medicago truncatula during progressive drought and after rewatering. Plant Cell and Environment, 37 (11), 2553-2576 doi: 10.1111/pce.12328.
Pang, Y., Cheng, X., Huhman, D. V., Ma, J., Peel, G. J., Yonekura-Sakakibara, K., Saito, K., Shen, G., Sumner, L. W., Tang, Y., Wen, J. Q., Yun, J. & Dixon, R. A. (2013). Medicago glucosyltransferase UGT72L1: potential roles in proanthocyanidin biosynthesis. Planta, 238 (1), 139-154 doi: 10.1007/s00425-013-1879-z.
Zhang, J., Lee, Y., Torres-Jerez, I., Wang, M., Yin, Y., Chou, W-C., He, J., Shen, H., Srivastava, A. C., Pennacchio, C., Lindquist, E., Grimwood, J., Schmutz, J., Xu, Y., Sharma, M., Sharma, R., Bartley, L.E., Ronald, P., Saha, M. C., Dixon, R. A., Tang, Y. & Udvardi, M. K. (2013). Development of an integrated transcript sequence database and a gene expression atlas for gene discovery and analysis in switchgrass (Panicum virgatum L.). Plant Journal, 74, 160-173 doi:10.1111/tpj.12104.
Shen, G., Huhman, D. V., Lei, Z., Snyder, J., Sumner, L. W., & Dixon, R. A. (2012). Characterization of an isoflavonoid-specific prenyltransferase from Lupinus albus. Plant Physiology, March, doi:10.1104/pp.112.195271.
Lei, Z., Huhman, D. V., & Sumner, L. W. (2011). Mass spectrometry strategies in metabolomics. Journal of Biological Chemistry, 286 (29), 25435-42 doi:10.1074/jbc.R111.238691.
Zhao, J., Huhman, D. V., Shadle, G., He, X-Z., Sumner, L. W., Tang, Y., & Dixon, R. A. (2011). MATE2 mediates vacuolar sequestration of flavonoid glycosides and glycoside malonates in Medicago truncatula. Plant Cell, 23, doi:10.1105/tpc.110.080804.
Dobritsa, A. A., Lei, Z., Nishikawa, S - I., Urbanczyk-Wochniak, E., Huhman, D. V., Preuss, D., & Sumner, L. W. (2010). LAP5 and LAP6 encode anther-specific proteins with similarity to chalcone synthase essential for pollen exine development in Arabidopsis thaliana . Plant Physiology, May 4, DOI:10.1104/pp.110.157446 .
Naoumkina, M., Modolo, L. V. , Huhman, D. V., Urbanczyk-Wochniak, E., Tang, Y., Sumner, L. W., & Dixon, R. A. (2010). Genomic and coexpression analyses predict multiple genes involved in triterpene saponin biosynthesis in Medicago truncatula. Plant Cell, 22, 850-866 DOI:10.1105/tpc.109.073270 .
Pang, Y., Wenger, J., Saathoff, K., Peel, G. J., Wen, J. Q., Huhman, D. V., Allen, S. N., Tang, Y., Cheng, X., Tadege, M., Ratet, P., Mysore, K. S., Sumner, L. W., Marks, M. D., & Dixon, R. A. (2009). A WD40 repeat protein from Medicago truncatula is necessary for tissue-specific anthocyanin and proanthocyanidin biosynthesis but not for trichome development. Plant Physiology, 151 (3), 1114-1129 DOI:10.1104/pp.109.144022.
Farag, M. A., Huhman, D. V., Dixon, R. A., & Sumner, L. W. (2008). Metabolomics reveals novel pathways and differential mechanistic and elicitor-specific responses in phenylpropanoid and isoflavonoid biosynthesis in Medicago truncatula cell cultures. Plant Physiology, 146 (2), 387-402 DOI:10.1104/pp.107.108431 .
Whaley, W. L., Rummel, J. D., Zemenu, E., Li, W., Yang, P., Rodgers, B., Bailey, J., Moody, J., Huhman, D. V., Maier, C., Sumner, L. W., & Starnes, S. D. (2007). Isolation and characterization of osajin and pomiferin: Discovery laboratory exercises for organic chemistry,. Chemical Educator, 12 (3), 179-184 DOI 10.1333/s00897072030a.
Farag, M. A., Huhman, D. V., Lei, Z., & Sumner, L. W. (2007). Metabolic profiling and systematic identification of flavonoids and isoflavonoids in roots and cell suspension cultures of Medicago truncatula using HPLC-UV-ESI-MS and GC-MS. Phytochemistry, 68 (3), 342-354 doi:10.1016/j.phytochem.2006.10.023.
Liu, C.-J., Deavours, B., Richard, S. B., Ferrer, J. L., Blount, J. W., Huhman, D. V., Dixon, R. A., & Noel, J. P. (2006). Structural basis for dual functionality of isoflavonoid O-methyltransferases in the evolution of plant defense responses. Plant Cell, 18, 3656-3669.
Zhou, L., Hopkins, A. A., Huhman, D. V., & Sumner, L. W. (2006). Efficient and sensitive method for quantitative analysis of alkaloids in hardinggrass (Phalaris aquatica L.). Journal of Agricultural and Food Chemistry, 54 (25), 9287-9291.
Frydman, A., Weisshaus, O., Huhman, D. V., Sumner, L. W., Bar-Peled, M., Lewinsohn, E., & Flurh, R. (2005). Metabolic engineering of plant cells for biotransformation of hesperedin into neohesperidin, a substrate for production of the low-calorie sweetener and flavor enhancer NHDC. Journal of Agricultural and Food Chemistry, 53 (25), 9708-9712.
Broeckling, C. D., Huhman, D. V., Farag, M. A., Smith, J. T., May, G. D., Mendes, P. J., Dixon, R. A., & Sumner, L. W. (2005). Metabolic profiling of Medicago truncatula cell cultures reveals the effects of biotic and abiotic elicitors on metabolism. Journal of Experimental Botany, 56 (410), 323-336 doi:10.1093/jxb/eri058.
Huhman, D. V., Berhow, M. A., & Sumner, L. W. (2005). Quantification of saponins in aerial and subterranean tissues of Medicago truncatuala. Journal of Agricultural and Food Chemistry, 53 (6), 1914-1920.
Achnine, L., Huhman, D. V., Farag, M. A., Sumner, L. W., Blount, J. W., & Dixon, R. A. (2005). Genomics-based selection and functional characterization of triterpene glycosyltransferases from the model legume Medicago truncatula. Plant Journal, 41 (6), 875-887 doi:10.1111/j.1365-313X.2005.02344..
Suzuki, H., Reddy, M .S. , Naoumkina, M., Aziz, N., May, G. D., Huhman, D. V., Sumner, L. W., Blount, J. W., Mendes, P. J., & Dixon, R. A. (2005). Methyl jasmonate and yeast elicitor induce differential transcriptional and metabolic re-programming in cell suspension cultures of the model legume Medicago truncatula. Planta, 220 (5), 696-707 doi:10.1007/s00425-004-1387-2 /.
Frydman, A., Weisshaus, O., Bar-Peled, M., Huhman, D. V., Sumner, L. W., Marin, F. R., Lewinsohn, E., Flurh, R., Gressel, J., & Eyal, Y. (2004). Citrus fruit bitter flavors: isolation and the functional characterization of the gene Cm1,2RhaT encoding a 1,2 rhamnosyltransferase, a key enzyme of the biosynthesis of the bitter flavonoids of citru. Plant Journal, 40 (1), 88-100.
Liu, C.-J., Huhman, D. V., Sumner, L. W., & Dixon, R. A. (2003). Regiospecific hydroxylation of isoflavones by cythchrome P450 81E enzymes from Medicago truncatula. Plant Journal, 36 (4), 471-484.
Huhman, D. V., & Sumner, L. W. (2002). Metabolic profiling of saponins in Medicago sativa and Medicago truncatula using Hplc coupled to an electrospray ion-trap mass. Phytochemistry, 59, 347-360.
Blount, J. W., Masoud, S. A., Sumner, L. W., Huhman, D. V., & Dixon, R. A. (2002). Over-expression of cinnamate 4-hydroxylase leads to increased accumulation of acetosyringone in elicited tobacco cell-suspension cultures. Planta, 214 (6), 902-910.
Felton, G. W., Korth, K. L., Bi, J. L., Wesley, S. V., Huhman, D. V., Mathews, M. C., Murphy, J. B., Lamb, C. J., & Dixon, R. A. (1999). Inverse relationship between systemic resistance of plants to microorganisms and to insect herbivory. Current Biology, 9 (6), 317-320 doi:10.1016/S0960-9822(99)80140-7.