The Samuel Roberts Noble Foundation, Inc.

Analytical Chemistry Core Facility: Publications

Srivastava, A. C., Chen, F., Ray, T., Pattathil, S., Pena, M. J., Avci, U., Li, H., Huhman, D. V., Backe, J., Urbanowicz, B., Miller, J. S., Bedair, M., Wyman, C. E., Sumner, L. W., York, W. S., Hahn, M. G., Dixon, R. A., Blancaflor, E. B. & Tang, Y. (2015). Loss of function of folylpolyglutamate synthetase 1 reduces lignin content and improves cell wall digestibility in Arabidopsis. Biotechnology for Biofuels, 8 (224), doi: 10.1186/s13068-015-0403-z.
Watson, B. S., Bedair, M., Urbanczyk-Wochniak, E., Huhman, D. V., Yang, D - S., Allen, S. N., Li, W., Tang, Y. & Sumner, L. W. (2015). Integrated metabolomics and transcriptomics reveal enhanced specialized metabolism in Medicago truncatula root border cells. Plant Physiology, 167 (4), 1699-1716 doi: 10.1104/pp.114.253054.
Ishiga, T., Uppalapati, S. R., Gill, B. S., Huhman, D. V., Tang, Y. & Mysore, K. S. (2015). Transcriptomic and metabolomic analyses identify a role for chlorophyll catabolism and phytoalexin during Medicago nonhost resistance against Asian soybean rust. Scientific Reports, 5 (13061), doi: 10.1038/srep13061.
Young, C. A., Charlton, N. D., Takach, J. E., Swoboda, G. A., Trammell, M. A., Huhman, D. V. & Hopkins, A. A. (2014). Characterization of Epichloë coenophiala within the U.S.: are all tall fescue endophytes created equal? Frontiers in Chemistry, 2 (95), doi: 10.3389/fchem.2014.00095.
Zhang, J., Cruz de Carvalho, M. H., Torres-Jerez, I., Kang, Y., Allen, S. N., Huhman, D. V., Tang, Y., Murray, J., Sumner, L. W. & Udvardi, M. K. (2014). Global reprogramming of transcription and metabolism in Medicago truncatula during progressive drought and after rewatering. Plant Cell and Environment, 37 (11), 2553-2576 doi: 10.1111/pce.12328.
Pang, Y., Cheng, X., Huhman, D. V., Ma, J., Peel, G. J., Yonekura-Sakakibara, K., Saito, K., Shen, G., Sumner, L. W., Tang, Y., Wen, J. Q., Yun, J. & Dixon, R. A. (2013). Medicago glucosyltransferase UGT72L1: potential roles in proanthocyanidin biosynthesis. Planta, 238 (1), 139-154 doi: 10.1007/s00425-013-1879-z.
Zhang, J., Lee, Y., Torres-Jerez, I., Wang, M., Yin, Y., Chou, W-C., He, J., Shen, H., Srivastava, A. C., Pennacchio, C., Lindquist, E., Grimwood, J., Schmutz, J., Xu, Y., Sharma, M., Sharma, R., Bartley, L.E., Ronald, P., Saha, M. C., Dixon, A., Tang, Y. & Udvardi, M. K. (2013). Development of an integrated transcript sequence database and a gene expression atlas for gene discovery and analysis in switchgrass (Panicum virgatum L.). Plant Journal, 74, 160-173 doi:10.1111/tpj.12104.
Shen, G., Huhman, D. V., Lei, Z., Snyder, J., Sumner, L. W., & Dixon, R. A. (2012). Characterization of an isoflavonoid-specific prenyltransferase from Lupinus albus. Plant Physiology, March, doi:10.1104/pp.112.195271.
Lei, Z., Huhman, D. V., & Sumner, L. W. (2011). Mass spectrometry strategies in metabolomics. Journal of Biological Chemistry, 286 (29), 25435-42 doi:10.1074/jbc.R111.238691.
Zhao, J., Huhman, D. V., Shadle, G., He, X-Z., Sumner, L. W., Tang, Y., & Dixon, R. A. (2011). MATE2 mediates vacuolar sequestration of flavonoid glycosides and glycoside malonates in Medicago truncatula. Plant Cell, 23, doi:10.1105/tpc.110.080804.
Dobritsa, A. A., Lei, Z., Nishikawa, S - I., Urbanczyk-Wochniak, E., Huhman, D. V., Preuss, D., & Sumner, L. W. (2010). LAP5 and LAP6 encode anther-specific proteins with similarity to chalcone synthase essential for pollen exine development in Arabidopsis thaliana . Plant Physiology, May 4, DOI:10.1104/pp.110.157446 .
Naoumkina, M., Modolo, L. V. , Huhman, D. V., Urbanczyk-Wochniak, E., Tang, Y., Sumner, L. W., & Dixon, R. A. (2010). Genomic and coexpression analyses predict multiple genes involved in triterpene saponin biosynthesis in Medicago truncatula. Plant Cell, 22, 850-866 DOI:10.1105/tpc.109.073270 .
Pang, Y., Wenger, J., Saathoff, K., Peel, G. J., Wen, J. Q., Huhman, D. V., Allen, S. N., Tang, Y., Cheng, X., Tadege, M., Ratet, P., Mysore, K. S., Sumner, L. W., Marks, M. D., & Dixon, R. A. (2009). A WD40 repeat protein from Medicago truncatula is necessary for tissue-specific anthocyanin and proanthocyanidin biosynthesis but not for trichome development. Plant Physiology, 151 (3), 1114-1129 DOI:10.1104/pp.109.144022.
Farag, M. A., Huhman, D. V., Dixon, R. A., & Sumner, L. W. (2008). Metabolomics reveals novel pathways and differential mechanistic and elicitor-specific responses in phenylpropanoid and isoflavonoid biosynthesis in Medicago truncatula cell cultures. Plant Physiology, 146 (2), 387-402 DOI:10.1104/pp.107.108431 .
Whaley, W. L., Rummel, J. D., Zemenu, E., Li, W., Yang, P., Rodgers, B., Bailey, J., Moody, J., Huhman, D. V., Maier, C., Sumner, L. W., & Starnes, S. D. (2007). Isolation and characterization of osajin and pomiferin: Discovery laboratory exercises for organic chemistry,. Chemical Educator, 12 (3), 179-184 DOI 10.1333/s00897072030a.
Farag, M. A., Huhman, D. V., Lei, Z., & Sumner, L. W. (2007). Metabolic profiling and systematic identification of flavonoids and isoflavonoids in roots and cell suspension cultures of Medicago truncatula using HPLC-UV-ESI-MS and GC-MS. Phytochemistry, 68 (3), 342-354 doi:10.1016/j.phytochem.2006.10.023.
Liu, C.-J., Deavours, B., Richard, S. B., Ferrer, J. L., Blount, J. W., Huhman, D. V., Dixon, R. A., & Noel, J. P. (2006). Structural basis for dual functionality of isoflavonoid O-methyltransferases in the evolution of plant defense responses. Plant Cell, 18, 3656-3669.
Zhou, L., Hopkins, A. A., Huhman, D. V., & Sumner, L. W. (2006). Efficient and sensitive method for quantitative analysis of alkaloids in hardinggrass (Phalaris aquatica L.). Journal of Agricultural and Food Chemistry, 54 (25), 9287-9291.
Frydman, A., Weisshaus, O., Huhman, D. V., Sumner, L. W., Bar-Peled, M., Lewinsohn, E., & Flurh, R. (2005). Metabolic engineering of plant cells for biotransformation of hesperedin into neohesperidin, a substrate for production of the low-calorie sweetener and flavor enhancer NHDC. Journal of Agricultural and Food Chemistry, 53 (25), 9708-9712.
Broeckling, C. D., Huhman, D. V., Farag, M. A., Smith, J. T., May, G. D., Mendes, P. J., Dixon, R. A., & Sumner, L. W. (2005). Metabolic profiling of Medicago truncatula cell cultures reveals the effects of biotic and abiotic elicitors on metabolism. Journal of Experimental Botany, 56 (410), 323-336 doi:10.1093/jxb/eri058.
Huhman, D. V., Berhow, M. A., & Sumner, L. W. (2005). Quantification of saponins in aerial and subterranean tissues of Medicago truncatuala. Journal of Agricultural and Food Chemistry, 53 (6), 1914-1920.
Achnine, L., Huhman, D. V., Farag, M. A., Sumner, L. W., Blount, J. W., & Dixon, R. A. (2005). Genomics-based selection and functional characterization of triterpene glycosyltransferases from the model legume Medicago truncatula. Plant Journal, 41 (6), 875-887 doi:10.1111/j.1365-313X.2005.02344..
Suzuki, H., Reddy, M .S. , Naoumkina, M., Aziz, N., May, G. D., Huhman, D. V., Sumner, L. W., Blount, J. W., Mendes, P. J., & Dixon, R. A. (2005). Methyl jasmonate and yeast elicitor induce differential transcriptional and metabolic re-programming in cell suspension cultures of the model legume Medicago truncatula. Planta, 220 (5), 696-707 doi:10.1007/s00425-004-1387-2 /.
Frydman, A., Weisshaus, O., Bar-Peled, M., Huhman, D. V., Sumner, L. W., Marin, F. R., Lewinsohn, E., Flurh, R., Gressel, J., & Eyal, Y. (2004). Citrus fruit bitter flavors: isolation and the functional characterization of the gene Cm1,2RhaT encoding a 1,2 rhamnosyltransferase, a key enzyme of the biosynthesis of the bitter flavonoids of citru. Plant Journal, 40 (1), 88-100.
Liu, C.-J., Huhman, D. V., Sumner, L. W., & Dixon, R. A. (2003). Regiospecific hydroxylation of isoflavones by cythchrome P450 81E enzymes from Medicago truncatula. Plant Journal, 36 (4), 471-484.
Huhman, D. V., & Sumner, L. W. (2002). Metabolic profiling of saponins in Medicago sativa and Medicago truncatula using Hplc coupled to an electrospray ion-trap mass. Phytochemistry, 59, 347-360.
Blount, J. W., Masoud, S. A., Sumner, L. W., Huhman, D. V., & Dixon, R. A. (2002). Over-expression of cinnamate 4-hydroxylase leads to increased accumulation of acetosyringone in elicited tobacco cell-suspension cultures. Planta, 214 (6), 902-910.
Felton, G. W., Korth, K. L., Bi, J. L., Wesley, S. V., Huhman, D. V., Mathews, M. C., Murphy, J. B., Lamb, C. J., & Dixon, R. A. (1999). Inverse relationship between systemic resistance of plants to microorganisms and to insect herbivory. Current Biology, 9 (6), 317-320 doi:10.1016/S0960-9822(99)80140-7.