Plant Biology Division: Publications (Last 12 months)

See a complete list of publications in the Noble Publication Listing.

Valentine, A. J. (2010). Comment on ‘Big science, little science’. Embo Reports, 11 (3), 152 DOI:10.1038/embor.2010.16.

Srivastava, A. C., Palanichelvam, K., Ma, J., Steele, J., Blancaflor, E. B. , & Tang, Y. (2010). Collection and analysis of expressed sequence tags derived from laser capture microdissected switchgrass (Panicum virgatum L. Alamo) vascular tissues. BioEnergy Research, DOI:10.1007/s12155-010-9080-8.

Wang, Y., Jha, A. K. , Chen, R., Doonan, J., & Yang, M. (2010). Polyploidy-associated genomic instability in Arabidopsis thaliana. Genesis, February, e-page DOI:10.1002/dvg.20610.

Lefebvre, B., Timmers, T., Mbengue, M., Moreau, S., Hervé, C., Tóth, K., Bittencourt-Silvestre, J., Klaus, D., Deslandes, L., Godiard, L., Murray, J., Udvardi, M. K., Raffaele, S., Mongrand, S., Cullimore, J., Gamas, P., Niebel, A., & Ott, T. (2010). A remorin protein interacts with symbiotic receptors and regulates bacterial infection. PNAS (Proceedings of the National Academy of Sciences), 107 (5), 2343-2348 DOI:10.1073/pnas.0913320107.

Roossinck, M. J., Saha, P., Wiley, G. B., Quan, J., White, J. D., Lai, H., Chavarria, F., Shen, G., & Roe, B. A. (2010). Ecogenomics: Using massively parallel pyrosequencing to understand virus ecology. Molecular Ecology, 19 (Suppl. 1), 81-88 DOI: 10.1111/j.1365-294X.2009.04470.x.

Chapman, K. D., & Blancaflor, E. B. (2010). Fatty acid amide hydrolase and the metabolism of N-acylethanolamine lipid mediators in plants. In T. Munnik (Ed.), Lipid Signaling in Plants/ Plant Cell Monographs. (pp. 293-306). Berlin Heidelberg: Springer-Verlag.

Rincon-Zachary, M., Teaster, N. D., Sparks, J. A., Valster, A. H., Motes, C. M., & Blancaflor, E. B. (2010). Fluorescence resonance energy transfer sensitized emission of yellow cameleon 3.60 reveals root-zone-specific calcium signatures in Arabidopsis in response to aluminum and other trivalent cations. Plant Physiology, , DOI:10.1104/pp.109.147256.

Senthil-Kumar, M., Hema, R., Suryachandra, T. R. , Ramegowda, H. V. , Gopalakrishna, R. , Rama, N., Udayakumar, M., & Mysore, K. S. (2010). Functional characterization of three water deficit stress-induced genes in tobacco and Arabidopsis: An approach based gene down regulation. Plant Physiology Biochemistry, 48, 35-44 DOI:10.1016/j.plaphy.2009.09.005.

Dai, X., Wang, G., Yang, D - S., Tang, Y., Broun, P., Marks, M. D., Sumner, L. W., Dixon, R. A., & Zhao, P. X. (2010). TrichOME: A comparative omics database for plant trichomes. Plant Physiology, 152, 44-54 DOI: 10.1104/pp.109.145813.

Li, H., Benedito, V. A., Udvardi, M. K., & Zhao, P. X. (2009). TransportTP: A two-phase classification approach for membrane transporter prediction and characterization. BMC Bioinformatics, 10 (418), DOI:10.1186/1471-2105-10-418.

Benedito, V. A., Li, H., Dai, X., He, J., Kaundal, R., Torres-Jerez, I., Harrison, M. J., Tang, Y., Zhao, P. X., & Udvardi, M. K. (2009). Genomic inventory and transcriptional analysis of Medicago truncatula transporters. Plant Physiology, , DOI: 10.1104/pp.109.148684.

Kaundal, R., & Raghava, G. P. (2009). RSLpred: an integrative system for predicting subcellular localization of rice proteins combining compositional and evolutionary information. Proteomics, 9 (9), 2324–2342, DOI:10.1002/pmic.200700597.

Wangdi, T., Uppalapati, S. R., Nagaraj, S., Ryu, C-M., Bender, C. L., & Mysore, K. S. (2009). A virus-induced gene silencing screen identifies a role for Thylakoid Formation1 in Pseudomonas syrinage pv. tomato induced disease symptom development in tomato and Arabidopsis. Plant Physiology, DOI:10.1104/pp.109.148106.

Kwak, Y., Bae, D-W., Mysore, K. S., & Kim, H. (2009). Different oxidative burst patterns occur during host and nonhost resistance responses triggered by Xanthomonas campestris in pepper. Journal of Plant Biotechnology, 36, 244-254.

Hou, G., & Blancaflor, E. B. (2009). Fern root development. In Beeckman, T. (Ed), Root Development: Annual Plant Reviews. (pp. 192-208). Malden, Massachusetts, USA: Blackwell Publishing.

Bamunusinghe, D., Hemenway, C. L. , Nelson, R. S., Sanderfoot, A. A., Ye, C-M., Silva, M. A. , Payton, M., & Verchot-Lubicz, J. (2009). Analysis of Potato virus X replicase and TGBp3 subcellular locations. Virology, 393 (2), 272-285 DOI: 10.1016/j.virol.2009.08.002.

Dyachok, J. , Yoo, C. M., Palanichelvam, K., & Blancaflor, E. B. (2009). Sample preparation for fluorescence imaging of the cytoskeleton in fixed and living plant roots. In Gavin, R. H. (Ed.), Cytoskeleton Methods and Protocols : Methods in Molecular Biology series. (pp. 157-169). Totowa, New Jersey: Humana Press.

Harries, P. A. , Park, J - W., Sasaki, N., Ballard, K. D., Maule, A. J., & Nelson, R. S. (2009). Differing requirements for actin and myosin by plant viruses for sustained intercellular movement. PNAS (Proceedings of the National Academy of Sciences), 106 (41), 17594-17599 doi: 10.1073/pnas.0909239106.

Farag, M. A., Deavours, B., de Fatima, A., Naoumkina, M., Dixon, R. A., & Sumner, L. W. (2009). Integrated metabolite and transcript profiling identify a biosynthetic mechanism for hispidol in Medicago truncatula cell cultures. Plant Physiology, 151 (3), 1096-1113 DOI:10.1104/pp.109.141481.

Ott, T., Sullivan, J., James, E. K., Flemetakis, M., Gunthur, C., Gibon, Y., Ronson, C., & Udvardi, M. K. (2009). Absence of symbiotic leghemoglobins alters bacteroid and plant cell differentiation during development of Lotus japonicus root nodules. Molecular Plant-Microbe Interactions, 22 (7), 800-808 DOI:10.1094/MPMI-22-7-0800.

Guether, M., Balestrini, R., Hannah, M., He, J., Udvardi, M. K., & Bonfante, P. (2009). Genome-wide reprogramming of regulatory networks, transport, cell wall and membrane biogenesis during arbuscular mycorrhizal symbiosis in Lotus japonicus. New Phytologist, 182, 200-212 DOI:10.1111/j.1469-8137.2008.02725.x.

Gruber, V., Blanchet, S., Diet, A., Zahaf, O., Boulem, A., Kakar, K., Alunni, B., Udvardi, M. K., Frugier, F., & Crespi, M. (2009). Identification of transcription factors involved in root apex responses to salt stress in Medicago truncatula. Molecular Genetics and Genomics, 281 (1), 55-66 DOI:10.1007/s00438-008-0392-8.

Tsui, C. K. , Marshall, W., Yokoyama, M. L. , Honda, D., Lippmeier, J. C. , Craven, K. D., Peterson, P. D., & Berbee, M. L. (2009). Labyrinthulomycetes phylogeny and its implications for the evolutionary loss of chloroplasts and gain of ectoplasmic gliding. Molecular Phylogenetics and Evolution, 50 (1), 129-140 DOI:10.1016/j.ympev.2008.09.027.

Kim, S-C., Kang, L., Nagaraj, S., Blancaflor, E. B. , Mysore, K. S., & Chapman, K. D. (2009). Mutations in Arabidopsis fatty acid amide hydrolase reveal that catalytic activity influences growth but not sensitivity to abscisic acid or pathogens. Journal of Biological Chemistry, 284 (49), 34065-34074 DOI:10.1074/jbc.M109.059022.

Rogers, C., Wen, J. Q., Chen, R., & Oldroyd, G. (2009). Deletion based reverse genetics in Medicago truncatula. Plant Physiology, 151 (3), 1077-1086 DOI:10.1104/pp.109.142919.

Hernandez, G., Valdes-Lopez, O., Ramirez, M., Goffard, N., Weiller, G., Aparicio-Fabre, R., Fuentes, S. I. , Erban, A., Kopka, J., Udvardi, M. K., & Vance, C.P. (2009). Global changes in the transcript and metabolic profiles during symbiotic nitrogen fixation in phosphorus-stressed common bean plants. Plant Physiology, 151 (3), 1221-1238 DOI:10.1104/pp.109.143842.

Uppalapati, S. R., Marek, S. M., Lee, H-K. , Nakashima, J., Tang, Y., Sledge, M. K., Dixon, R. A., & Mysore, K. S. (2009). Global gene expression profiling during Medicago truncatula-Phymatotrichopsis omnivora interaction reveals a role for jasmonic acid, ethylene, and the flavonoid pathway in disease development. MPMI - Molecular Plant-Microbe Interactions, 22 (1), 7-17 DOI:10.1094/MPMI -22-1-0007.

Myers, T., Chengedza, S., Lightfoot, S., Pan, Y., Dedmond, D., Cole, L., Tang, Y., & Benbrook, D. M. (2009). Flexible heteroarotinoid (Flex-Het) SHetA2 inhibits angiogenesis in Vitro and in Vivo. Investigational New Drugs, 27 (4), 304-318 DOI:10.1007/s10637-008-9175-7.

Tadege, M., Wang, T. L. , Wen, J. Q., Ratet, P., & Mysore, K. S. (2009). Mutagenesis and beyond! Tools for understanding legume biology. Plant Physiology, 151 (3), 978-984 DOI:10.1104/pp.109.144097.

Jiang, Q., Zhang, J., Guo, X., Monteros, M. J., & Wang, Z - Y. (2009). Physiological characterization of transgenic alfalfa (Medicago sativa) plants for improved drought tolerance. International Journal of Plant Sciences, 170 (8), 969-978 doi: 10.1086/600138.

Libault, M., Joshi, T., Benedito, V. A., Xu, D. , Udvardi, M. K., & Stacey, G. (2009). Legume transcription factor genes; what makes legumes so special? Plant Physiology, 151, 991-1001 DOI:10.1104/pp.109.144105.

Puckette, M., Peal, L., Steele, J., Tang, Y., & Mahalingam, R. (2009). Ozone responsive genes in Medicago truncatula: Analysis by suppression subtraction hybridization. Journal of Plant Physiology, 166, 1284-1295, DOI:10.1016/j.jplph.2009.01.009.

Reichert, A., He, X-Z., & Dixon, R. A. (2009). Phenylalanine ammonia-lyase (PAL) from tobacco (Nicotiana tabacum): characterization of the four tobacco PAL genes and active heterotetrameric enzymes. Biochemical Journal, 424, 233–242 DOI:10.1042/BJ20090620 .

Ishiga, Y., Uppalapati, S. R., Ishiga, T., Elavarthi, S., Martin, B., & Bender, C. L. (2009). The phytotoxin coronatine induces light-dependent reactive oxygen species in tomato seedlings. New Phytologist, 181 (1), 147-160 DOI: 10.1111/j.1469-8137.2008.02639.x.

Zhao, J., & Dixon, R. A. (2009). MATE transporters facilitate vacuolar uptake of epicatechin 3'-O-glucoside for proanthocyanidin biosynthesis in Medicago truncatula and Arabidopsis. Plant Cell, 21 (8), 2323–2340 DOI:10.1105/tpc.109.067819.

Hogslund, N., Radutoiu, S., Krusell, L., Voroshilova, V., Hannah, M., Goffard, N., Sanchez, D.H., Lippold, F., Ott, T., Sato, S., Tabata, S., Liboriussen, P., Lohmann, G., Schauser, L. , Weiller, G., Udvardi, M. K., & Stougaard, J. (2009). Dissection of symbiosis and organ development by integrated transcriptome analysis of Lotus japonicus mutant and wild-type plants. PLoS One, 4 (8), e6556 DOI: 10.1371/journal.pone.0006556.

Pang, Y., Wenger, J., Saathoff, K., Peel, G. J., Wen, J. Q., Huhman, D. V., Allen, S. N., Tang, Y., Cheng, X., Tadege, M., Ratet, P., Mysore, K. S., Sumner, L. W., Marks, M. D., & Dixon, R. A. (2009). A WD40 repeat protein from Medicago truncatula is necessary for tissue-specific anthocyanin and proanthocyanidin biosynthesis, but not for trichome development. Plant Physiology, 151 (3), 1114-1129 DOI:10.1104/pp.109.144022.

Mysore, K. S., Wang, K., Muthappa, S.-K., Ryu, C-M., & Kang, L. (2009). Breakdown of basal resistance in Nicotiana benthamiana and Arabidopsis against host and nonhost pathogens. In American Phytopathological Society Annual Meeting (pp. S168). Portland, Oregon: American Phytopathological Society.

Anonymous, P.B. (2009). Finding a way to thrive (Zeng-Yu Wang). Legacy, 3 (1), 10-13.

Udvardi, M. K. (2009). Gene atlas project looks to identify gene function. Ag News and Views, July, 7.

Modolo, L. V. , Dixon, R. A., & Reichert, A. (2009). Introduction to the different classes of biosynthetic enzymes. In A. E. Osbourn & V. Lanzotti (Eds.), Plant-derived Natural Products. (pp. 143-163). New York: Springer.

Anonymous, P.B. (2009). Scientist fights against tomato disease (Rao Uppalapati). Legacy, 3 (1), 5.

Marks, M. D., Wenger, J., Gilding, E., Jilk, R., & Dixon, R. A. (2009). Transcriptome analysis of Arabidopsis wild-type and gl3-sst sim trichomes identifies four additional genes required for trichome development. Molecular Plant, June 19, 1-20 DOI:10.1093/mp/ssp037.

Wang, G., & Dixon, R. A. (2009). Heterodimeric geranyl(geranyl)diphosphate synthase from hop (Humulus lupulus) and the evolution of monoterpene biosynthesis. PNAS (Proceedings of the National Academy of Sciences), 106 (24), 9914-9919 DOI:10.1073.pnas.0904069106.

Dobritsa, A. A., Nishikawa, S - I., Preuss, D., Urbanczyk-Wochniak, E., Sumner, L. W., Hammond, A., Carlson, A. L., & Swanson, R. J. (2009). LAP3, a novel plant protein required for pollen development, is essential for proper exine formation. Sexual Plant Reproduction, 22 (3), 167-177 doi: 10.1007/s00497-009-0101-8.

Peel, G. J., Pang, Y., Modolo, L. V. , & Dixon, R. A. (2009). The LAP1 MYB transcription factor orchestrates anthocyanidin biosynthesis and glycosylation in Medicago. Plant Journal, 59 (1), 136-149, DOI:10.1111/j.1365-313X.2009.03885.x.

Kouri, E. D., Labrou, N. E., Garbis, S. D., Kalliampakou, K. I. , Stedel, C., Dimou, M., Udvardi, M. K., & Flemetakis, M. (2009). Molecular and biochemical characterization of the parvulin-type PPIases in Lotus japonicus. Plant Physiology, 150 (3), 1160-1173 DOI:10.1104/pp.108.132415 .

Sawasdipuksa, N., Sumner, L. W., Lei, Z., & Sangvanich, P. (2009). Proteome analysis of Pithecellobium dulce seeds using two-dimensional gel electrophoresis and tandem mass spectrometry . Journal of the Science of Food and Agriculture, 89 (8), 1284-1291.

Ma, X-F., Wright, E., Ge, Y. X., Bell, J., Xi, Y., Bouton, J. H., & Wang, Z. Y. (2009). Improving phosphorus acquisition of white clover (Trifolium repens L.) by transgenic expression of plant-derived phytase and acid phosphatase genes. Plant Science, 176 (4), 479-488, DOI:10.1016/j.plantsci.2009.01.001.

Webb, R., Wren, J. D., Jeffries, M., Kelly, J. A., Kaufman, K. M., Tang, Y., Frank, M. B., Merrill, J., Kimberly, R. P., Edberg, J. C., Ramsey-Goldman, R., Petri, M., Reveille, J. D., Alarcon, G. S., Vila, L. M. , Alarcon-Riquelme, M. E., James, J. A., Vyse, T. J., Moser, K. L., Gaffney, P. M., Gilkeson, G. S., Harley, J. B., & Sawalha, A. H. (2009). Variants within MECP2, a key transcription regulator, are associated with increased susceptibility to lupus and differential gene expression in patients with systemic lupus erythematosus. Arthritis & Rheumatism, 60 (4), 1076-1084 DOI:10.1002/art.24360.

Van der Ent, S., Van Hulten, M., Pozo, M. J. , Czechowski, T., Udvardi, M. K., Pieterse, C. M. , & Ton, J. (2009). Priming of plant innate immunity by rhizobacteria and B-aminobutyric acid: differences and similarities in regulation. New Phytologist, 183, 419–431 DOI: 10.1111/j.1469-8137.2009.02851.x.

Scofield, S. R. , & Nelson, R. S. (2009). Resources for virus-induced gene silencing in the grasses. Plant Physiology, 149, 152-157 DOI:10.1104/pp.108.128702.

Harries, P. A. , Palanichelvam, K., Yu, W., Schoelz, J. E., & Nelson, R. S. (2009). The Cauliflower mosaic virus protein P6 forms motile inclusions that traffic along actin microfilaments and stabilize microtubules. Plant Physiology, 149 (2), 1005-1016, DOI:10.1104/pp.108.131755.